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mmu_ciBcar1_579
Basic information of circular RNA
PanCircBase ID:
mmu_ciBcar1_579
mm39_Chr. Position ID:
chr8|112439391|112439970|-
Gene name:
Bcar1
Transcript:
ENSMUST00000166232.4
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
579
Exon/intron sizes in nt:
579
Flanking exon/introns:
chr8:112439322-112439970
Splice length:
579
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGGGTGTTCACCCTGCCCAGTGCCAAGAGCTCTTGATTCTGCTACTGTTGTTGCGAGGACCCTAATACCTCAATCCCCCTCTCATCCCACACACAGAGGTCTGTGGTCAGAGGGAATTCAGACTCCAGGAGTGGCCACTGGTGAACCCTAGTGCCCTCCCTGTATCTTGCCCCATTTTTGGACTGATAATCAACATGGCTATGTCCCTGAGGATTGAAATGCTAACCAGATGGCTCCAGAAGCCTTGGGGATGGGCTTCTGTGGTGGCCATAGATGTAACTCATTCTGGGTGTAGTCATTCCAAGGAGACAGACACTGGGGTCCAGGGGAGTAGACAAGGGGAATGGGGAGGTGGGTAAGAAGAGACAACTGCATCCCACCTGCGTATGTGGGCGAAGGGCAGAGGTTGGGTTTGATTTCAGGTACGGGAGCCATCCCAGGAGGGCCATGGCCTTGTGGAGTGAGTGCATCCTGTGCCAGGGAGCCCTCCTGGGCCAAGCTGCTCCCTTTAGAAGCCTCCTCTTCCTGGGACTGGTGCACCTGCACTGCCACCTGGTGGTTTTCCAGCCCTTGCACCC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCAAGCTGCTCCCTTTAGA
60.04
GGGTCCTCGCAACAACAGTA
59.97
148
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCCAAGCTGCTCCCTTTAGA
60.04
TGTGGGATGAGAGGGGGATT
59.95
177
PCR template sequence:
AGGGAGCCCTCCTGGGCCAAGCTGCTCCCTTTAGAAGCCTCCTCTTCCTGGGACTGGTGCACCTGCACTGCCACCTGGTGGTTTTCCAGCCCTTGCACCCGTGGGTGTTCACCCTGCCCAGTGCCAAGAGCTCTTGATTCTGCTACTGTTGTTGCGAGGACCCTAATACCTCAATCCCCCTCTCATCCCACACACAGAGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-199a-5p(1), mmu-miR-34c-5p(1), mmu-miR-31-5p(1), mmu-miR-211-5p(1), mmu-miR-328-3p(1), mmu-miR-202-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AGCCCTTGCACCCGTGGGTGTTCACC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIBCAR1_579_ORF_1
0.744
-0.126303894
0.166547502
387
ORF sequence:
ATGGGGAGGTGGGTAAGAAGAGACAACTGCATCCCACCTGCGTATGTGGGCGAAGGGCAGAGGTTGGGTTTGATTTCAGGTACGGGAGCCATCCCAGGAGGGCCATGGCCTTGTGGAGTGAGTGCATCCTGTGCCAGGGAGCCCTCCTGGGCCAAGCTGCTCCCTTTAGAAGCCTCCTCTTCCTGGGACTGGTGCACCTGCACTGCCACCTGGTGGTTTTCCAGCCCTTGCACCCGTGGGTGTTCACCCTGCCCAGTGCCAAGAGCTCTTGATTCTGCTACTGTTGTTGCGAGGACCCTAATACCTCAATCCCCCTCTCATCCCACACACAGAGGTCTGTGGTCAGAGGGAATTCAGACTCCAGGAGTGGCCACTGGTGAACCCTAG
Peptide sequence:
MGRWVRRDNCIPPAYVGEGQRLGLISGTGAIPGGPWPCGVSASCAREPSWAKLLPLEASSSWDWCTCTATWWFSSPCTRGCSPCPVPRALDSATVVARTLIPQSPSHPTHRGLWSEGIQTPGVATGEP
IRESfinder result
IRESfinder score
0.545346239
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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