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mmu_ciB830012L14Rik_453
Basic information of circular RNA
PanCircBase ID:
mmu_ciB830012L14Rik_453
mm39_Chr. Position ID:
chr12|109651079|109651532|+
Gene name:
B830012L14Rik
Transcript:
ENSMUST00000239068.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
9
Exon/intron offsets:
0
Genomic length:
453
Exon/intron sizes in nt:
453
Flanking exon/introns:
chr12:109651079-109651552
Splice length:
453
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAACATGGGTAAAAGCCATACATTTTGTCGATGTTTTGGTTATTATGGCTGTAACTTTACAAAGCATGAAATAGAATCCTACAGGTCTACTCTTACTTTGTCTTTTGGGGTGAAGATGGGCTTGTGTCCTGAGTAAATACGATGTCTGAAGATGGTTCATAGCACTTTCTTCATAGCGCTGTGAATACTACAGTCTGAATATATCAGAGAGCTGTGCTCCTGTTGAATATTTGTGTATCACCAGCATTGCTAGTGAATTATTGGCTTAGCCAGTAAATAGTATCTATGAGAACGAGGAAAGGTCAAGCCATTTCTGGACCAATGATGATAGTTACCAAGGTATGAGAGAGATGACGAATAACACTTGTCTGAAGCTCAGAGGTCCAACCCAAAAGATAGGTAGATAATCAAAGGTCCTTGAAGGACAATGGCATTTTTTTTTTCTTTTGTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAAGCTCAGAGGTCCAACCC
60.04
TCATGCTTTGTAAAGTTACAGCCA
59.18
152
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCTCAGAGGTCCAACCCAAA
59.89
TCATGCTTTGTAAAGTTACAGCCA
59.18
149
PCR template sequence:
TGACGAATAACACTTGTCTGAAGCTCAGAGGTCCAACCCAAAAGATAGGTAGATAATCAAAGGTCCTTGAAGGACAATGGCATTTTTTTTTTCTTTTGTGGTAAACATGGGTAAAAGCCATACATTTTGTCGATGTTTTGGTTATTATGGCTGTAACTTTACAAAGCATGAAATAGAATCCTACAGGTCTACTCTTACTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-135a-5p(2), mmu-miR-9-5p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTTTCTTTTGTGGTAAACATGGGTA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIB830012L14RIK_453_ORF_1
0.6672
-0.326601961
0.014922785
162
ORF sequence:
ATGGCATTTTTTTTTTCTTTTGTGGTAAACATGGGTAAAAGCCATACATTTTGTCGATGTTTTGGTTATTATGGCTGTAACTTTACAAAGCATGAAATAGAATCCTACAGGTCTACTCTTACTTTGTCTTTTGGGGTGAAGATGGGCTTGTGTCCTGAGTAA
Peptide sequence:
MAFFFSFVVNMGKSHTFCRCFGYYGCNFTKHEIESYRSTLTLSFGVKMGLCPE
IRESfinder result
IRESfinder score
0.617204189
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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