top of page
mmu_ciAsah1_707
Basic information of circular RNA
PanCircBase ID:
mmu_ciAsah1_707
mm39_Chr. Position ID:
chr8|41807156|41807863|-
Gene name:
Asah1
Transcript:
ENSMUST00000034000.15
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
707
Exon/intron sizes in nt:
707
Flanking exon/introns:
chr8:41807137-41807863
Splice length:
707
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATGTTATAAATGTTAACTCTTCTTGTTCTGACTTTATGAAATATAATTCTGCTTTTTAAAAACTACTTTCTAAGTTGCATATGGAAGCCCACACCATAATCCAAGCACTTGGGAGGACTGTGGCAGACCAAGTGTTAGGTGCTTAGGGGCCAGCCTGGTCTACATAATGAGTTTCAAAGTACCCTCTGCTATAGTCTCAAAAATACTACTAGGGAAGATAAAAGATGGGTTGTCATTTGAGAGCACTTGAGGACACTCAGGATCATAGGATAGCTCTCAGTCACCTGTAATTCTAGTTCAGTGGAGTTGTTTGGCCTTGTTTGACATGAGGCATGAACATGGTATATATACGTACTACTCATACATATAAAATAAAAATAATCTTCTTTAAAATTACTACTGAAAGTTAAAGGCATATATTTGATTTTCTTCCACTATGTATAGTAATTGATAGAGGAAAACATCATTTCCCTGTAGCTTTTTGTAATTTGGGACATAGAATTGGTCTCTCCTTCCCTTTGTACTATCTTCCTTCATCTGAATGATTGAGAAGCAATGCTACTTTAAAGAGAAAATTGTGTTCATAAATTCATTGAAAATACTTTCAAACTGTGCTATTTTATTACATATTTTGAATAAGTCAGATCTAAATTGTTTTTATGACAGCAATATGAATCTTAAATCGCAGTACTTATGTATTTTTAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGACAGCAATATGAATCTTAAATCGCA
59.99
GGTGTGGGCTTCCATATGCA
60.4
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGACAGCAATATGAATCTTAAATCGCA
59.99
TGGTGTGGGCTTCCATATGC
60.4
143
PCR template sequence:
CAAACTGTGCTATTTTATTACATATTTTGAATAAGTCAGATCTAAATTGTTTTTATGACAGCAATATGAATCTTAAATCGCAGTACTTATGTATTTTTAGGTATGTTATAAATGTTAACTCTTCTTGTTCTGACTTTATGAAATATAATTCTGCTTTTTAAAAACTACTTTCTAAGTTGCATATGGAAGCCCACACCATA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-137-3p(1), mmu-miR-125b-5p(1), mmu-miR-1187(1)
siRNAs for circular RNA silencing
Junction sequence
TATGTATTTTTAGGTATGTTATAAAT
siRNA sets
TATAACATACCTAAAAATA,AACATACCTAAAAATACAT,TAACATACCTAAAAATACA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIASAH1_707_ORF_1
0.7589
-0.393341201
0.020848637
225
ORF sequence:
ATGATTGAGAAGCAATGCTACTTTAAAGAGAAAATTGTGTTCATAAATTCATTGAAAATACTTTCAAACTGTGCTATTTTATTACATATTTTGAATAAGTCAGATCTAAATTGTTTTTATGACAGCAATATGAATCTTAAATCGCAGTACTTATGTATTTTTAGGTATGTTATAAATGTTAACTCTTCTTGTTCTGACTTTATGAAATATAATTCTGCTTTTTAA
Peptide sequence:
MIEKQCYFKEKIVFINSLKILSNCAILLHILNKSDLNCFYDSNMNLKSQYLCIFRYVINVNSSCSDFMKYNSAF
IRESfinder result
IRESfinder score
0.904105917
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page