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mmu_ciArhgef25_179
Basic information of circular RNA
PanCircBase ID:
mmu_ciArhgef25_179
mm39_Chr. Position ID:
chr10|127021264|127021443|-
Gene name:
Arhgef25
Transcript:
ENSMUST00000218654.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
179
Exon/intron sizes in nt:
179
Flanking exon/introns:
chr10:127021225-127021443
Splice length:
179
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTGATGGAGCCCTGAGCCAGGCGCAGGGGAAGAGCGCTCTCTGGTAGTCTATCCTAGACTCCGTATTGGAACCATGGGTCCGATGTGATTCAAGGAGCCACTGGGGTTTTGTAGGGAGAGCGACTAGGGCGTGTAGCTGAAAGTCTGGGACGTTTGGAGGTGAGCGCTCTGAGGA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCCACTGGGGTTTTGTAGG
59.89
CATCGGACCCATGGTTCCAA
60.03
169
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTAGGGAGAGCGACTAGGG
59.82
CATCGGACCCATGGTTCCAA
60.03
155
PCR template sequence:
GATTCAAGGAGCCACTGGGGTTTTGTAGGGAGAGCGACTAGGGCGTGTAGCTGAAAGTCTGGGACGTTTGGAGGTGAGCGCTCTGAGGAGTGAGTGATGGAGCCCTGAGCCAGGCGCAGGGGAAGAGCGCTCTCTGGTAGTCTATCCTAGACTCCGTATTGGAACCATGGGTCCGATG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-149-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AGCGCTCTGAGGAGTGAGTGATGGAG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.29542794
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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