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mmu_ciAp2m1_323
Basic information of circular RNA
PanCircBase ID:
mmu_ciAp2m1_323
mm39_Chr. Position ID:
chr16|20361044|20361367|+
Gene name:
Ap2m1
Transcript:
ENSMUST00000090023.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
9
Exon/intron offsets:
0
Genomic length:
323
Exon/intron sizes in nt:
323
Flanking exon/introns:
chr16:20361044-20361388
Splice length:
323
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTCTTCAGGAGGCCACAGGCAGGCTCAAGGCGTCATAGTGTACCTTCCGGTTAAGTTTGACCTGTCCTCTGTGTGGGTTATAGGGTGAGAAAAGAGTGCATGCTTGTCCAGGAGCCTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCCATCTCTCATGCACTTGAGGAGCACGTGTGTCTAGTTTTCAAGATATTCCCGTTGGCCCTTGTCGACTTGTGTCTAAAGCGTACAGTCTGGGTGAGGGAGAAACTGCAGCTCCGGGTACTGAAGGAGTAACTACTGCAGCCTCCTGCTGC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCCTTGTCGACTTGTGTCT
60.25
ACACTATGACGCCTTGAGCC
60.11
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTGAGGGAGAAACTGCAGCT
59.96
AACCCACACAGAGGACAGGT
60.69
142
PCR template sequence:
CGTTGGCCCTTGTCGACTTGTGTCTAAAGCGTACAGTCTGGGTGAGGGAGAAACTGCAGCTCCGGGTACTGAAGGAGTAACTACTGCAGCCTCCTGCTGCGTGAGTCTTCAGGAGGCCACAGGCAGGCTCAAGGCGTCATAGTGTACCTTCCGGTTAAGTTTGACCTGTCCTCTGTGTGGGTTATAGGGTGAGAAAAGAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-466d-3p(2), mmu-miR-466b-3p(2), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AGCCTCCTGCTGCGTGAGTCTTCAGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.696910719
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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