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mmu_ciAnxa11_1045
Basic information of circular RNA
PanCircBase ID:
mmu_ciAnxa11_1045
mm39_Chr. Position ID:
chr14|25873322|25874367|+
Gene name:
Anxa11
Transcript:
ENSMUST00000022416.15
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
4
Exon/intron offsets:
0
Genomic length:
1045
Exon/intron sizes in nt:
1045
Flanking exon/introns:
chr14:25873322-25874367
Splice length:
1045
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTGCTTGTCCAAACTGCGTTCAAGCACAGATCTCTGGTCTAGCCAACAAGTTCTTAGAGGATTGAAGGGAAGGCTCAGGCCTCCAGCTACAACATACAAAAGAGCTCTAATTTCTCTTGTGTGCCCACCGAAGGCAAACACACAAGGTCTGGAAGCACAGCCCTGGTGGTTGCTCTTCCGTGAGATTACTCCAGAGGCTTCCAGCATCATGGCCTCATGCCCAGTAGGCCCCTTCTGTGACTTCCTAGACAAATGTGAAGGAGTCTCAGAATCCTCTCTGGATAGGGAAGATTGGCAGCTCCTCCAGGATTTATTTTGGCTCATTCTGGAGATCAGTTTGTGTTAGCAATGCCTGGAATTCATTGTCATGGTTACATGGCCAAACCAGCCAAGCACAGGGCTGGTGGTATGCGCTGGCTGCCTAGTTTTAGACTATTCTAGAGGGTCCATCACCTCCTTGCTTTCATTCCACTGCAACACTGCCCACTCTTCCCCACCCTGAGCGGCTGCCCACTGTTGCTCCCGTCTGTTCCCCATCATGCCCCTTATTGCGGTGATAACCAGCGTGTTCTAGCCACTAGAAAGGCCACTCACTAGGCTACAATAAGCCTGTTTGTAAACACCTGAGGGGAGCACACCTTAAAAGGAGGAAGGTTGATTAGGGCTCATGGTTTCCATCGATGGCTTCTTGGCTTTGTGACTGTGGGCCTGTGGTGGGCAGAACATTGTGGCAGAGAACACTTGGTAAACCAAAGCATAGCAGACTGGAAGTAAATAATGAAAGGGGCTCGGGCCCCAATATTCCCCTCAAGGACCTGCTCCGTCTCTAGTGACCTAATATCTTTCCAGCCGCTACTTCCTAAACACCACATTGACCCGTGAACCTTGGGGCTATTTGTCCAGTGCTTTTGATTTCCTGCTCCTTTAGGTACCTCAGTGCTTAGAGAAGGGGGTGTTTGTGGGATACGAAGAGGTAGAAGAGTCTTACACCTCGGGGCGGCATGGGTGGGTCATCTTACCTGTGGCTATTTGTCTGAGTAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAAGGGGGTGTTTGTGGGAT
59.89
GCCTGAGCCTTCCCTTCAAT
60.03
180
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGGGTGTTTGTGGGATACGA
59.67
GCCTGAGCCTTCCCTTCAAT
60.03
176
PCR template sequence:
TAGAGAAGGGGGTGTTTGTGGGATACGAAGAGGTAGAAGAGTCTTACACCTCGGGGCGGCATGGGTGGGTCATCTTACCTGTGGCTATTTGTCTGAGTAGGTAAGTGCTTGTCCAAACTGCGTTCAAGCACAGATCTCTGGTCTAGCCAACAAGTTCTTAGAGGATTGAAGGGAAGGCTCAGGCCTCCAGCTACAACATA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
14
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-23b-3p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-216a-5p(1), mmu-miR-23a-3p(1), mmu-miR-22-3p(1), mmu-miR-483-5p(1), mmu-miR-218-5p(1), mmu-miR-539-5p(1), mmu-miR-335-3p(1), mmu-miR-669d-5p(1), mmu-miR-350-3p(1), mmu-miR-3061-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTGTCTGAGTAGGTAAGTGCTTGTC
siRNA sets
GACAAGCACTTACCTACTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.68112518
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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