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mmu_ciAnkrd17_435
Basic information of circular RNA
PanCircBase ID:
mmu_ciAnkrd17_435
mm39_Chr. Position ID:
chr5|90400918|90401353|-
Gene name:
Ankrd17
Transcript:
ENSMUST00000014421.15
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
26
Exon/intron offsets:
0
Genomic length:
435
Exon/intron sizes in nt:
435
Flanking exon/introns:
chr5:90400881-90401353
Splice length:
435
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTTAGTTCCAAGTTCTGCTTTTACTGGTGCTGTGTTAAACACCTTGTGAGACAAGTAAATTACCAAATACTTTTGTATGGTAAAGAATACTAAGATGTTGTTTAGATTTTATGCTGAGAAAATAAATAATTTTCACTATGTAATTTTTCGTGATTGTTAAACTTAGCTTATGAAAAACATGGATAGTGAAGCTGGGTCATGCCTGTAGTCTCAGCCTTTGGGGAGGCTGAAGCAAGAGTTCAAAGGTTCAAAGCCAGTTTGGGCTACATGTTGACTTCAACATTCTTTTAGTATCTCAACTTAAATACCAATTGATGTTAAAGAAATTGGAAGAAATTCATTAACAAAATAAGACATATTAGCATTCATATTACTCATTTCTGCAACTGGTTACGTGGCCTTAATTGGTATTTATAACTATTTTCTTCTACTACC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGCAACTGGTTACGTGGC
60.88
TCTTTACCATACAAAAGTATTTGGTAA
55.56
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGCAACTGGTTACGTGGC
60.88
CAACATCTTAGTATTCTTTACCATACA
55.56
156
PCR template sequence:
ATTCATTAACAAAATAAGACATATTAGCATTCATATTACTCATTTCTGCAACTGGTTACGTGGCCTTAATTGGTATTTATAACTATTTTCTTCTACTACCGTTAGTTCCAAGTTCTGCTTTTACTGGTGCTGTGTTAAACACCTTGTGAGACAAGTAAATTACCAAATACTTTTGTATGGTAAAGAATACTAAGATGTTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTCTTCTACTACCGTTAGTTCCAAGT
siRNA sets
GAACTAACGGTAGTAGAAG,TTGGAACTAACGGTAGTAG,AACTAACGGTAGTAGAAGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.885803721
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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