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mmu_ciAnapc5_820
Basic information of circular RNA
PanCircBase ID:
mmu_ciAnapc5_820
mm39_Chr. Position ID:
chr5|122956096|122956916|-
Gene name:
Anapc5
Transcript:
ENSMUST00000086216.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
820
Exon/intron sizes in nt:
820
Flanking exon/introns:
chr5:122956067-122956916
Splice length:
820
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATGGAACTTCTCCGGAGAGCAGGGAGCGTTCCCATTGAAGTGAGCGGCGTTCTGAGGGGCATCTGTCCTGACTTGGGTGTACAGAAGCAAGCAGACTAGGGTGCTGGCTGTGTGCGGTTTGTATTCACTGCCTTCCTGTTTCGTTCTCTATTCGACCGTAACCTGTGGGGAGGCAGCTCTGTTCTCCTGGAGTAGTTAGCCTGGGCCTGGGGTCTTTAGGGTCGCTCAGCTCTTTTCACAGTCCTGCGGACCACTTGACTGGGTTGTGCCAACTGTAAGTGGGGTCACCAGCCACACTTAGGAAGCGAGGTGAGTGGAGACCGCTCTTAAGCTTTAGTGTTGAAGCGCGTGTGCACGTGACATTTCTTTGATGCTTTTGTACTAACTGTGTCCCGTGGGCCCCCCCACCCCCACACTCTGTTGCATGGTCATTTTTATGTTAGTCGACATCAGTTGGTTATTGATCTCCTGTCCCCAGGTCATGGATGTACAAGGTAGACATAGCCTTGCCTCTGACAGAGACAGGTGTGCTGGAAGGAGGGATGGCAGATGTTCAAAGGGAAATCAGTAAATAAGATAACATAATTACACCTCAGCTTTTGACTAGACTCACATACAATAACTATGGTAGCTTCAGAGAGTTTGAATAGCCGTGAGGAAAATGGAGGCCTGAAGGGCTAGAGGTGGGAGAGGCCTGAGACCTGAATGGAGGGAGAGCATGCGGGAAGAGCACTGGAGGAGGAGGGACAGCACCTCTGATTCCTCTGAGGGGAATGGGGCTGGAAGTTGTTGTGAGTCTTGGGCTATCAGCTAATGCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGGACAGCACCTCTGATTCC
60.11
GGACAGATGCCCCTCAGAAC
60.11
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGGACAGCACCTCTGATTCC
60.11
AGGACAGATGCCCCTCAGAA
60.25
146
PCR template sequence:
ATGCGGGAAGAGCACTGGAGGAGGAGGGACAGCACCTCTGATTCCTCTGAGGGGAATGGGGCTGGAAGTTGTTGTGAGTCTTGGGCTATCAGCTAATGCTGTATGGAACTTCTCCGGAGAGCAGGGAGCGTTCCCATTGAAGTGAGCGGCGTTCTGAGGGGCATCTGTCCTGACTTGGGTGTACAGAAGCAAGCAGACTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-335-5p(1), mmu-miR-298-5p(1), mmu-miR-320-3p(1), mmu-miR-136-5p(1), mmu-miR-96-5p(1), mmu-miR-34b-5p(1), mmu-miR-297a-5p(1), mmu-miR-207(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATCAGCTAATGCTGTATGGAACTTCT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.646787586
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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