top of page
mmu_ciAnapc1_1382
Basic information of circular RNA
PanCircBase ID:
mmu_ciAnapc1_1382
mm39_Chr. Position ID:
chr2|128505985|128507367|-
Gene name:
Anapc1
Transcript:
ENSMUST00000014499.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
16
Exon/intron offsets:
0
Genomic length:
1382
Exon/intron sizes in nt:
1382
Flanking exon/introns:
chr2:128505982-128507367
Splice length:
1382
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGGTACTGTGCAGTCTCAGTTTGTTTACCACACTGTTGATGGGGACAGTTTCTGGTCTCAGTTTGTTTACCACACTGTTGATGGGAACAGTTTCTGGTCTCTTTTTTGTTGTTGTTGTTGTTGTCTGAATGCAGTACCTGTGGAGGCCAGAAGAGGCTGTCAGGTCCCCTCAGACTAGAGTTAAGAATGGTTGTGAGTTGCTATATGGGTGCTAGAAATTGAACCCAGGTTCTCTACAAGAGCAGCCTGGGCTCTCGACTGCTGAACCAACTCTCCACCCTGCGGTTTCTGTTTGTAGAAGTGAGTCCTTTGCAACATCTGGTTTATTCTTGTTTGTTTTCAGCTAAAGCATGCCGTTTTGGTTTTCTAAGATTTATAGTCTAGGCTTCTAGGCTTCTCAGTGTCTGCTCATTCATTTGATTGATGAGGCTGTGCTGCTAAAGATGGCGTCAGTGACAGTGGTGGTGTGGAGGGAACAAGAAGGAAAACTTGGACTGTCTGGAGCCATTTTGTCCCAATAGTGAATCTGCTGTTTACAGCAGGCAGTCCCCTTGGCTCTCTTCACTGTAGCTGATTTTCACACCAATGATGTGCCATAACTAAGAGCAGTATATATTAGATAGTGTTCGCCCTAACCTACTTATGGCATGGTGAGGAAGACAGTGTAGAAATTACGAGTTGCAGTGTTAGTTGACAGGAATGTTCACTCATTGAGAATAGCTTGTAGCATCCCTAAGCATTCCTGTTAGTAGGTGCCTGTGCTGCATGTTGAATCTACTGAAGGATTTAATCCACATTTTATATAAATTTATTTGTGTAGAAATTAGATTTTTGTTGTTGTTGTTGTTAGTTTTTTGGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAAGTCACTCTACAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCTGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTTTGTTTTCTTTTCTTTTTTTTTTTTTTGAAATTAGATATTTTTTATGAAGTAAGCTTGATTGTTCAAAGTAGGACAGTTTTGAGAGTGAAAAGGGAACAGTTATTTCCTGGAGCAGTGGTTATTTCTGGTGAACTGGGCTATATGCTCACTTTATTTCTAGTCCCGAATTAGGGATCTGACAGCTAATCTTCAGATTTTCTGTGAGCCCTGTTGAATTCAGTAGTTAGTTTAACGTGATTGATAATGTTGAGGTAATGTTTGTGCCCAGTGTCCTTAGTGATAGTTTCTGTTTTTCCTGGCTGGCCTGGACATGGTAGCAATTTGAACCTTCCCATTTGAAAGGAGGCAGGCAGTACATACTAAAATCAGTATTTGCTTTTAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGTTTTTCCTGGCTGGCC
60.83
TGTCCCCATCAACAGTGTGG
59.89
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGTTTTTCCTGGCTGGCC
60.83
GTCCCCATCAACAGTGTGGT
59.89
145
PCR template sequence:
GTTTCTGTTTTTCCTGGCTGGCCTGGACATGGTAGCAATTTGAACCTTCCCATTTGAAAGGAGGCAGGCAGTACATACTAAAATCAGTATTTGCTTTTAAGTAGGTACTGTGCAGTCTCAGTTTGTTTACCACACTGTTGATGGGGACAGTTTCTGGTCTCAGTTTGTTTACCACACTGTTGATGGGAACAGTTTCTGGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
22
Interacting miRNAs (#binding sites)
mmu-miR-200a-3p(2), mmu-miR-141-3p(2), mmu-miR-30e-5p(2), mmu-miR-30a-5p(2), mmu-miR-30c-5p(2), mmu-miR-495-3p(2), mmu-miR-30d-5p(2), mmu-miR-30b-5p(2), mmu-miR-15a-5p(1), mmu-miR-429-3p(1), mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-15b-5p(1), mmu-miR-298-5p(1), mmu-miR-217-5p(1), mmu-miR-709(1), mmu-miR-339-5p(1), mmu-miR-24-3p(1), mmu-miR-680(1), mmu-miR-3087-3p(1), mmu-miR-452-3p(1), mmu-miR-3065-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TATTTGCTTTTAAGTAGGTACTGTGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.874488522
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page