top of page
mmu_ciAnapc1_1012
Basic information of circular RNA
PanCircBase ID:
mmu_ciAnapc1_1012
mm39_Chr. Position ID:
chr2|128507472|128508484|-
Gene name:
Anapc1
Transcript:
ENSMUST00000014499.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
15
Exon/intron offsets:
0
Genomic length:
1012
Exon/intron sizes in nt:
1012
Flanking exon/introns:
chr2:128507428-128508484
Splice length:
1012
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTCCTCCTCCAGAGGGTGGAGCAGCTGACTGATCCTCCAGAGGGTGGAGCAGCTGGCTAAGGGTTATTTGTCTGATAGTTCACATTTGGCAGGATGTAAAATTATGTGTGGAAATGAAAACGAACATTTCTCATGATTTTAAACATTTATTGTTCTATGATGTGCATATGTGTGTGGGTATGCATTCATGTATATGTGTGTGCATATGTGTGTGGGTATGCATTCATGTGTTTATGACATGAATGGCCACAACTTTGGAGTTGGTTCTCTGCTTCCATCTTCATGTGAGCTGTAAGAAATGAATGCAGGGTGCCAGGCTTTAACTGCTGAGTTACTTTGTCTTTCAGATATCTTGACATTTTTAAAACATGCTATTATTTTGTACTATTTTACTTTAATTCTGTTTTCTGAGATTTCTATATTAAACATTTACTGAACCCAACCCCAGTTGAGGAGCTGTTGGGAATGGATGGTTTCTGGGGGAGGGAAGGTCAGTTTCCTTAAAGGATATGACCCTGGTAGGATGACCACCCATCCATCAGTGGATTCTTCCACATCTGAGAGTTTATGGGTAGCATAAATTGGGCTTGATGGGTTGTTAAGAAGAAGGAGAGAGGACAGGAAGTTGGGGGTTGGGAAATAGGATCTGCGAGGAGTTGGGGGTGACTATGATAAAAGGACATTATATGAAATTCTCAAGTAGCTAATAAGAGTATATAACAAGTGTATCTAAAACAAGCACATTTACTCCGTCAGTTCACATTGCTGTGTTTTTGTCTTTTCGGAGAAAATCACTTTTGATGATGTTGGTGTCGTAGTGTTTGGATAAAAGCATTATTAAAAGAATTTTTGAAAGTATTTTACAAAAATGTATATTTAGTTAGAAGCATTCATTCTCATTGAAAAGTATAGCAGTTCATTTTATTGTATTTTGCCTTGACTGGCAGACAGTAGTAAAAATTGCCATTTTTTTTTTTAAAGCTTTTAAAAACTTAGAATGCTTAAGCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGCAGACAGTAGTAAAAATTGCCA
59.78
CAAATAACCCTTAGCCAGCTGC
59.9
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGCAGACAGTAGTAAAAATTGCC
59.78
CAAATAACCCTTAGCCAGCTGC
59.9
141
PCR template sequence:
ATAGCAGTTCATTTTATTGTATTTTGCCTTGACTGGCAGACAGTAGTAAAAATTGCCATTTTTTTTTTTAAAGCTTTTAAAAACTTAGAATGCTTAAGCAGTAAGTCCTCCTCCAGAGGGTGGAGCAGCTGACTGATCCTCCAGAGGGTGGAGCAGCTGGCTAAGGGTTATTTGTCTGATAGTTCACATTTGGCAGGATG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-466d-3p(2), mmu-miR-466b-3p(2), mmu-miR-216a-5p(1), mmu-miR-218-5p(1), mmu-miR-342-3p(1), mmu-miR-539-5p(1), mmu-miR-335-3p(1), mmu-miR-697(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GAATGCTTAAGCAGTAAGTCCTCCTC
siRNA sets
GAGGACTTACTGCTTAAGC,AGGACTTACTGCTTAAGCA,ACTTACTGCTTAAGCATTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.830877333
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page