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mmu_ciAmigo2_313

Basic information of circular RNA
PanCircBase ID:

mmu_ciAmigo2_313

mm39_Chr. Position ID:

chr15|97144508|97144821|-

Gene name:

Amigo2

Transcript:

ENSMUST00000053106.7

CircRNA type:

Circular intronic (ci)RNA

Exon/Intron count:

1

Exon/intron indexes:

1

Exon/intron offsets:

0

Genomic length:

313

Exon/intron sizes in nt:

313

Flanking exon/introns:

chr15:97144478-97144821

Splice length:

313

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

GTATTTCCGTTCAATTGTTTATGGGATGCGATTGTGTGTTTTTGTGTGTGTCGGTGGAGGGAGTTAAGGCAGAATGCATCCTTTAGAAACAAAAACACACAAAAAAGCCTGAGTTTCTCATGCTGAGACTGTCGCATTGAGAGAAGGTACCTGGAAATCTCACTGAGTTGGAGTAATCTAGGAAAAATGCATATAACAGGTTCTTTATTAAAAAGCCACCCCTGTTGGAGATGGAACCCATTTCAAAAGTTAATTGGAATGAAAGCAATTACGGAATAACTCTAACGGGTTAACTAGTGGCAGTTAACTTGTA

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

CCCTGTTGGAGATGGAACCC

60.03

TAACTCCCTCCACCGACACA

60.18

160

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

CCCCTGTTGGAGATGGAACC

60.03

TAACTCCCTCCACCGACACA

60.18

161

PCR template sequence:

AGCCACCCCTGTTGGAGATGGAACCCATTTCAAAAGTTAATTGGAATGAAAGCAATTACGGAATAACTCTAACGGGTTAACTAGTGGCAGTTAACTTGTAGTATTTCCGTTCAATTGTTTATGGGATGCGATTGTGTGTTTTTGTGTGTGTCGGTGGAGGGAGTTAAGGCAGAATGCATCCTTTAGAAACAAAAACACAC

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

3

Interacting miRNAs (#binding sites)

mmu-miR-324-5p(1), mmu-miR-384-3p(1), mmu-miR-452-3p(1)

siRNAs for circular RNA silencing
Junction sequence

CAGTTAACTTGTAGTATTTCCGTTCA

siRNA sets

AAATACTACAAGTTAACTG, GAACGGAAATACTACAAGT, AACGGAAATACTACAAGTT

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

NA

NA

NA

NA

NA

ORF sequence:

NA

Peptide sequence:

NA

IRESfinder result

IRESfinder score

0.814767422

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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