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mmu_ciAlg8_1653
Basic information of circular RNA
PanCircBase ID:
mmu_ciAlg8_1653
mm39_Chr. Position ID:
chr7|97037795|97039448|+
Gene name:
Alg8
Transcript:
ENSMUST00000098300.6
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
10
Exon/intron offsets:
0
Genomic length:
1653
Exon/intron sizes in nt:
1653
Flanking exon/introns:
chr7:97037795-97039448
Splice length:
1653
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGCAAACAGCTCGAAGGTTGGCATGTTTCAATGTCTAGCTATCTAGTGGCTGCCTATTCTAGACATAGCCAGTGGTATGGGAGACACGAAGGCACTGCAATGAGGGCAGCAGGCAAACTGGCTTGATCTTTAGACCTGTCAGGATTCTGAGATGTGCAAAAAATCCATGTGTTGATCCCATATTTTTGATGATTAAGCCCTGTAGCAGGTCTGGATATTGTGTGGGAGCGTGCCCTGGGGAAGGCTGGCATCCTTGGCATCAACACATCAGTGAAAATAAAGTCCCAGGTCCCTGTTCCATGTTGTTAGTCCAAGTAAGGACTAAGTATGACAAAATGGTTCCATGTATGTCCACTTTAGACTTTCCAGAACTGTTTGATTGTTTCTTTCATGTCATATTGGTTTGCATGCTTTGGGATACTTAGGATAAATTGGTGTAATCCCATCTTAGAATCTGCAGAAACCGGGCCCAGAGTGCTCATGATTTTCCAAGTTACACAGTTAAGCCCCATGCCTGCATCCCCTGTACTGAGGAGGCTGAGACAGAAGGATCATGACTTCAAGGCCATCTTGGGATTTACACCAAGACGCTGCCTTAAAATCGAAGTCACAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCTGAGGTCCTGAGTTCAACTCCCAGCAGCCACATGGTGGCTCACAACCATCTGTAATGGGATCCCGTGTCCTCTCCTGGGGTGTCTGAAGAGAGTAACAGTGTACTTATATACATAAAACAGAGAAATAAATCTTAAAAAAAGAAAAAAGAAAAACGCTAAGTCACAGAGCTAACAGATCACAGAACTTCAGCAGACCATATGCTGCCCTTTTCTGTTTTTGAGGGTCTTTTCAAGTCATGAGAAAGCATTTAATGTTTTCTTTGGAGCCATGGGATTTCCAGATTGCAAAGTAGAGCAAACTCTAATCTAAGCTCTTACTGCAGGTCCAGGGATTGTCTCAAAGATTAGCTTTATGTTTGGAAATGAATTCTCGAGTATAGTCCCTGTCTGTCTCCACTAAGCAGCTCCCAGTCCTACATTAATTTATTTGAGGACTATAGCAAGCAAAGTGTTTCCCTCCCCGCAGCCTACCCCTACCCCTCTGTCTCTCTCTCTGTCTCTCCCTCCCTGCCTCCCAAGGAGAGTGGGATGTCTGTCTTATTCCCCTTTTCTCTTTGGAACATTTTATTGATTACTTTAAAAACAACACCCAGGGCCTGGAGAAATGGCTAAGTATATAAGAGCACTCACTGTCTGCTCTTCCAGAGGACCTAGCTCAGTTCCCATCACCCACTTGGCAGGTGTGACTCTGGTTCTGGCCTCCATGGGCATCATGCACGCACATGGGATGCAGGCACACATGTGGACAGACATGCACAGGAAGTAATCAGATCTTTCTTTAAAACAGACATCGCTAGTTCTCATTTGAATTGGACCTATAACAAAACCAGTATTTATTTCACAAGAAAATTATCAGTTATCAGTATTCGTTTTATAAAGGGGTTATCAGTGTTTGTTTTAACCAGGCCTAATGATAGCCATGTTTATTTGAGCTCTTTGCAATCACATTTTAGCTGTGTTAAGGAATTATTGTAAGAATTTTTATTTTTAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCAGGCCTAATGATAGCCA
58.18
TGTCTCCCATACCACTGGCT
60.25
180
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGGCCTAATGATAGCCATGT
59.96
GTGTCTCCCATACCACTGGC
60.11
180
PCR template sequence:
TTTGTTTTAACCAGGCCTAATGATAGCCATGTTTATTTGAGCTCTTTGCAATCACATTTTAGCTGTGTTAAGGAATTATTGTAAGAATTTTTATTTTTAGGTAAGCAAACAGCTCGAAGGTTGGCATGTTTCAATGTCTAGCTATCTAGTGGCTGCCTATTCTAGACATAGCCAGTGGTATGGGAGACACGAAGGCACTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-429-3p(2), mmu-miR-466a-5p(2), mmu-miR-1187(2), mmu-miR-200b-3p(1), mmu-miR-200c-3p(1), mmu-miR-709(1), mmu-miR-326-3p(1), mmu-miR-185-5p(1), mmu-miR-495-3p(1), mmu-miR-705(1), mmu-miR-27a-5p(1), mmu-miR-466p-5p(1), mmu-miR-129-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTTTATTTTTAGGTAAGCAAACAGC
siRNA sets
TTTGCTTACCTAAAAATAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.822524781
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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