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mmu_ciAkap10_4285
Basic information of circular RNA
PanCircBase ID:
mmu_ciAkap10_4285
mm39_Chr. Position ID:
chr11|61763847|61768132|-
Gene name:
Akap10
Transcript:
ENSMUST00000102650.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
14
Exon/intron offsets:
0
Genomic length:
4285
Exon/intron sizes in nt:
4285
Flanking exon/introns:
chr11:61763847-61768132
Splice length:
4285
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGGGTTACTTCTATTCTGACCTAGCCTTTTGTTGATGTTGTTTGTTTGAGACAGGGTCACAATGTAGGCTGGGCTAGCCTCAAAGTCTTGTGGCCAGTTCACCTGGACCTTCTGATCTTCCCACTTCCACCTCCTAACTGCTGGAATTATAGGACGTGCCATCACAGCTGATTTGTACAGTGCTGAGGAAGGACCCTTGGGCTTTGTGAATGTTAGGTAAACACTTTAACAACTTAACTGTATCTCTGCCCTTGACCAGCTTTTGTAAAATAAATCAATAAGCACACACACACACACACACACACACACACACACACACACACACACACACTTTGAGTATTTAGTAATTAAAAAAAAAAAAAAGAGGAGCTGGAATTAGGACTCTGCAGTTAAGAGTGCATACTGCTCTTGCACAGGACCAGAATTTGGTTCCCTGTATCCACAGCCATCTCTAACACATAGAACTGATGCTTGTGGTCTCCTCAGATCCCTGCACTCTCACACACATACAACATTAGGATCCTTCTGTATCTCCCTCGGAAGAACTAACTGCTATAGGAAGTATCTTTCTCATCATAAGGCACTGCAAAGATGGTGAACTAAGTGCAAACTGTTTCTAGATCATGGATGTTGGGCATATGGGACTGTAATCCCTGAAAGAAGTAGGATTCAAGTGAGCCCTAGCCCACTGTTGAGAACTGGCTTCTGAAATAGAGAAGGCAAATCTGAACAGAGCCCAGGAGATTTGCTGAACTAAAAAATCAAAAGGAAAGTTTAGAGAGGGAAAGCTTGATGCAGTTATTTATAGCAGAAAAGAAGATACTGTCCAGAAATAAAAGGTACAGAGATACTCGAGGAAGGTCTCAAACCATTGGCCTAGCCAGAAACCGATCTGCATGGATGTGGAAGAAAATGCTTGTCTCAAGGGACAAACCCCAAAAGTTTGCCAAATGATGCCTGAAAGACAGGGCTAGGAGTAGTGTAGTTGATGTTAACACAAAGGATACAGAACAGTGGGGACTTGTGTCTTAATACTTGAGCTAAGTGAGCCCTAATAGACCTCAACAAAAGTAGTTTGGAAGGATCAGACTAACTTCTAAGTAACAACTGTATGCTAAAACTAAAGCTAGTCCTCTTTAATGGAACACAAGTAAAGATGGAAAGAGAGGGCTGAGTGACACAGTTGTCCTGAACTCCACAGCATGCTCTAGCAGATTCACCACCTGCACAGGGGCGTGCAGACTGAAAATTTAATATGGAATAACATTTTACAAGAATGTCAAGGCAAACAATTTAATGGGAAGAAATAGATAGGTTTTAAAAACTAAGATTCCTGAAATAAGAAATAATATTAGAGATGAAAACTAACCCTGAATGAAATCATTTGCATTTAGGAAATACAAGAAGAGGTTCTCTGAAAAGAATGTCTACTCCTCCATGAAGACAAACAGAAAAAGACTGGAAATATAAATTAAATAAATAAATAAATAAATAAGCAAGCAAGCAATTGGATGATGTGATACCTTCTAACAAACATTTGAGGCACAAATGCAGAAAAAAATACTTGAAAAAATATTTATTAAAAGTTCCAGATTTAATGAAAACTTTAATATATTTACAGAGAAGCAATATAAACAAAATACTAGAATACATAACATGAGTTCTGGGTTCCAGTAATAAAAAGGATATTTAAAATAGCTGGAGGTATATTACACATATAGATAAGAACAGCAATCATCCTGTTAAAACTTAAGTAAGCCAGACGATCCAGTGTTTTAAAATTGCCTAATACGTAAAAGTCAAACAAGAAGGTATCTCTTGATAAGTGAAGTTAAAATAAAGGGATTTTTATAAGCCAAACAAAACCTGAGAGAATTCAGTCCTAGTGACCGAACAACTGAAATCAATCCTAAGAAAATTCTTTTAAACCAGGTGTGGCAGTAGAACCTATAATTTTAGTTCTCAGGAACCTGAAGGTGGAGGATCATGAATTTAAAACCAACCTGTGCTTATATATAGGGAACTCAAAGAATGCCTGGCCACATAATAATACTGTCTAAAAAAAAACAAAACAAGCAATCCAACAAGAGTTTTTAATTAGTTTTTAATTGCAAATTTTTGACACTTCCTGGATGAATTTTCCAAGACAAAGTCTCTATAGCCCAGGCTATCCTTGAATTCATAATACTCTTCTAATTTCAGCTTTTTTAAGTATGAGGATTATATTCATAAGTCACCACATCCAACTGTGTTCATTTTTTGCAGGGCGGGGGGAGGTGTCAACTATTGCTATACTTTACATTCAAGCAAAAAGACATCTTGGGAAACTATATTCATAAGGGTCCTGTGCTTTATCAAGCACAGGGTCTCACGCATGCTAGATGAGTGGTCTTTCCTAAACTGTATGTATCCTGGCCTAGGAAAGTGTACTGTGACATCCTCAGCAGCTTGGATGTTTTGAATTTGATGCAGGTCCAACATTCATCTTGCCCTGCCAGATGTTAGAGAGAGAGAGACAGAGACAGGGACAGAGAGAATGACAGACAAAGAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAGAAAGAGAGAAAGAAGAGAGAGAGGAAAGGAAAGGAAAGGATAAAGGAAAGGAGAAAGGAAAGAAAAGAAAAGAAAAGAAAGAAAAAGAGAGAACCAAGCTCCTCAGGGCCTCCTGAATGCTCTACTGTGGAGCCGACCCTCCCAGCCTTTGGATGTGTTTTGTGAGGTCTTTCTTCCTTCAGTGATAGATCAGAGACACTGGGAGAGGAAAACCTCAGAAGACCTCCTTCCGATTCTCATTCCATGGCCATGAATGTGAGCAGACATGAGCCCATACAGATTATTTGGTCTGTGTAGCCAGTTTGCCACCTCTCTGTTTTGAATTCCTTGGATTCAATATATTTGTGCCTGGAGTGTATTTAGGCATTATCTCACATCATTACTGAATTTTTAAAGGATTTGTTGCTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAAACTTGTCGCCAAAAACAAAAACAACAACAAAAAAGCAATCCTTATGTGTCTCCTGGGTTATTTAAGTTATGTAGTGTTGTCAAAGACAGTGTGTATTCAGTATCTGCACGTGTGTCTTTACCTTCTCAGATGAGTTCAGTAGAGTTGAGTGAGTCCTACAAGTAGAACCTCGTCAAAAAATAAAAATATCAGGCCGGAGAGATGGCTCATCAGTTAAGAGACCCCAGGTTCAGTTCCCAGCACCCATGTGACAGCTCACAACTGTTTGTAACTCCAGTTCCAAGGGATGCTTACACAGACATACATAATAGGTAAAACATCAATGTACATAATTTTCTTTTAAAAAATGAGAACATTGACAGACGTAGAGATCATTCAGTTGTTAAGTTCTTTGGAGTTTGATCCCTAGAACCCATATTAAAAAGCCAGATGCAGTGACATTTGTAACCTGGTGCTTACAAGCAGATTCCTAGGGTTCATTGTATCACTAAATTGCTGAGCTCCAGGGCAGTTAGAGTCCCTGTTTTAAAAAACACAAAGTAGGCTGGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCAAGGCCAGCCTGGTCTATGGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACCAAAGGGGAAAAAAAAACAACAAAAAAAAACCCCACAAAGTTTACAGCCCCTGAAGAATGGCACCCACAGTTCACCTTTGGTTTCTACACGATGTTCACACAAATGCACATGCAAATACATGAACACAAACATACAGAAAAGTGAATGGTCTTATTCTACTAACTCTGTCTAAACAGAAAAATGAATCCAGGGCTGGAGAAATGGCTCAGTGGTTAAGAGCAGGTCCTGAGTGCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATTTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTATATACATAAAATAAACCTTTTAAAAAAAACTTCTTAGCTTCTTTAAGCTCCTGTGAACTCAGGAATATCTGAGGATAATTAATACTCTGCCCTAAGCCCTGACTGGAAGCACTGTATGTGCTGGGCATCTCTCTCATCTGTGCTGATAGTATGTCATCTACTACTGGAATGTACCTTACCTTTTACTTTTTCTTCTTTTTCCCTAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTGCTGGGCATCTCTCTCAT
59.53
AGCCCAGCCTACATTGTGAC
60.04
167
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATGTGCTGGGCATCTCTCTC
59.53
AGCCCAGCCTACATTGTGAC
60.04
169
PCR template sequence:
AAGCACTGTATGTGCTGGGCATCTCTCTCATCTGTGCTGATAGTATGTCATCTACTACTGGAATGTACCTTACCTTTTACTTTTTCTTCTTTTTCCCTAGGTAAGGGTTACTTCTATTCTGACCTAGCCTTTTGTTGATGTTGTTTGTTTGAGACAGGGTCACAATGTAGGCTGGGCTAGCCTCAAAGTCTTGTGGCCAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
51
Interacting miRNAs (#binding sites)
mmu-miR-5101(5), mmu-miR-297a-5p(4), mmu-miR-1187(4), mmu-miR-181a-5p(2), mmu-miR-217-5p(2), mmu-miR-320-3p(2), mmu-miR-466a-5p(2), mmu-miR-466p-5p(2), mmu-miR-350-3p(2), mmu-miR-574-5p(2), mmu-miR-9-5p(1), mmu-miR-23b-3p(1), mmu-miR-199a-5p(1), mmu-miR-375-3p(1), mmu-miR-31-5p(1), mmu-miR-26a-5p(1), mmu-miR-92a-3p(1), mmu-miR-211-5p(1), mmu-miR-29b-3p(1), mmu-miR-335-5p(1), mmu-miR-29c-3p(1), mmu-miR-146a-5p(1), mmu-miR-18a-5p(1), mmu-miR-324-5p(1), mmu-miR-23a-3p(1), mmu-miR-25-3p(1), mmu-miR-339-5p(1), mmu-miR-181b-5p(1), mmu-miR-351-5p(1), mmu-miR-26b-5p(1), mmu-miR-218-5p(1), mmu-miR-382-5p(1), mmu-miR-183-5p(1), mmu-miR-758-3p(1), mmu-miR-324-3p(1), mmu-miR-383-5p(1), mmu-miR-466d-3p(1), mmu-miR-690(1), mmu-miR-29b-2-5p(1), mmu-miR-1198-5p(1), mmu-miR-207(1), mmu-miR-335-3p(1), mmu-miR-669d-5p(1), mmu-miR-3087-3p(1), mmu-miR-3470b(1), mmu-miR-490-3p(1), mmu-miR-193b-3p(1), mmu-miR-146b-5p(1), mmu-miR-344-3p(1), mmu-miR-338-3p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TCTTTTTCCCTAGGTAAGGGTTACTT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.77856285
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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