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mmu_ciAdh1_917
Basic information of circular RNA
PanCircBase ID:
mmu_ciAdh1_917
mm39_Chr. Position ID:
chr3|137994645|137995562|+
Gene name:
Adh1
Transcript:
ENSMUST00000004232.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
7
Exon/intron offsets:
0
Genomic length:
917
Exon/intron sizes in nt:
917
Flanking exon/introns:
chr3:137994645-137995562
Splice length:
917
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATGTATTCACAGCTCAAGATCAATCCTGCATCTGTCTGTATACGTCAGGGCGGGCGTGTGGATGTGTGTGTGGAGGACAGAGAACATTCGATTCATTACCTGGGAGCCATTTGCCACGTTCTTTGTGACAGGGTGTCACAGTGACCAGGCTAGCCTTGCTGGCTGGAATCCACTGGTTCCCTTTATCCAGAGCTGGAATTACAAGAACTCCCACAACCACATCAGCTGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTCAGTTGTTGTTTTGTTATTCAAACTCAGGTTTGACTGAGCCATCTCCTCAGCTTTGAGGATCAAATTTTTAATGTATTTCAGAATTTCTTCCCTTCTGTTACAGAGAAGGTCAGATTTTAGAAGGCAAAACAATTTAAAAACATGAAAATTACTGTTCTCTCTAAGCAAGAACTAATGCAGGAAATTGTAAGACAAGCTTCATTGTGTCCCCATAAACTAGCCAGGGCTTCTTCTGGCTCCTCCTACTTCCTAATGTCATTGTGAGAGCCCCAAAATGCCTTATAGGACACAGGAAATCCAAGGCAGTAGTAGTCCATGCCTATAATCATGACCTAAGTCTGAACAGCGGTGAGAATGGCAAAGCTCCCTTACTTTGAGTACAAACATCTTCAATATGATTTCTCTAGGAAAGAACTAATAAGCCACCTTCATTAGCGAGAGATCGCGGTTTAGAGGGGTGGCATACGATAAAAATGTTAATGAAATGCAGAATGTTTTTGAGCCTCAGTGTCTGTGCAGCCTGCAGACCACTGTTCTTTTATGAACTTTAGTTTCCCTGCAAAGTCTGGTTGGCTTGCTCCCCCCGCCACTCCCCCACACATTCCCTCCCTCCAACCCCCCAGGCTGGATCTCATGGAGATGTTGCTCTCCTTCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CACATTCCCTCCCTCCAACC
60.03
GTCCTCCACACACACATCCA
59.6
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CACATTCCCTCCCTCCAACC
60.03
TGTCCTCCACACACACATCC
59.6
141
PCR template sequence:
TGCAAAGTCTGGTTGGCTTGCTCCCCCCGCCACTCCCCCACACATTCCCTCCCTCCAACCCCCCAGGCTGGATCTCATGGAGATGTTGCTCTCCTTCCAGGTATGTATTCACAGCTCAAGATCAATCCTGCATCTGTCTGTATACGTCAGGGCGGGCGTGTGGATGTGTGTGTGGAGGACAGAGAACATTCGATTCATTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-206-3p(1), mmu-miR-320-3p(1), mmu-miR-339-5p(1), mmu-miR-10b-5p(1), mmu-miR-24-3p(1), mmu-miR-690(1), mmu-miR-384-3p(1), mmu-miR-1187(1), mmu-miR-539-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GCTCTCCTTCCAGGTATGTATTCACA
siRNA sets
ATACATACCTGGAAGGAGA, TACATACCTGGAAGGAGAG, AATACATACCTGGAAGGAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIADH1_917_ORF_1
0.7528
-0.108000426
0.207501805
414
ORF sequence:
ATGAACTTTAGTTTCCCTGCAAAGTCTGGTTGGCTTGCTCCCCCCGCCACTCCCCCACACATTCCCTCCCTCCAACCCCCCAGGCTGGATCTCATGGAGATGTTGCTCTCCTTCCAGGTATGTATTCACAGCTCAAGATCAATCCTGCATCTGTCTGTATACGTCAGGGCGGGCGTGTGGATGTGTGTGTGGAGGACAGAGAACATTCGATTCATTACCTGGGAGCCATTTGCCACGTTCTTTGTGACAGGGTGTCACAGTGACCAGGCTAGCCTTGCTGGCTGGAATCCACTGGTTCCCTTTATCCAGAGCTGGAATTACAAGAACTCCCACAACCACATCAGCTGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTCAGTTGTTGTTTTGTTATTCAAACTCAGGTTTGACTGA
Peptide sequence:
MNFSFPAKSGWLAPPATPPHIPSLQPPRLDLMEMLLSFQVCIHSSRSILHLSVYVRAGVWMCVWRTENIRFITWEPFATFFVTGCHSDQASLAGWNPLVPFIQSWNYKNSHNHISCWLVGWLVGWSVVVLLFKLRFD
IRESfinder result
IRESfinder score
0.756772102
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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