top of page
mmu_ciAdgrv1_108
Basic information of circular RNA
PanCircBase ID:
mmu_ciAdgrv1_108
mm39_Chr. Position ID:
chr13|81781017|81781125|-
Gene name:
Adgrv1
Transcript:
ENSMUST00000095585.11
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
108
Exon/intron sizes in nt:
108
Flanking exon/introns:
chr13:81743477-81781125
Splice length:
108
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGGATGTGACTTGGGGTTGGTGCTGAGGGAATCCAGTGGGTCGGGGAGGGCTACAGCATCTCTTAGGCAGTTCCCGGGCAGCCGCCGCTTGCACCTGTTGCTGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCTCTTAGGCAGTTCCCGGG
60.98
TGGATTCCCTCAGCACCAAC
59.96
85
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTCTTAGGCAGTTCCCGGG
60.98
ACCAACCCCAAGTCACATCC
59.89
71
PCR template sequence:
ACAGCATCTCTTAGGCAGTTCCCGGGCAGCCGCCGCTTGCACCTGTTGCTGGAGGTAGGATGTGACTTGGGGTTGGTGCTGAGGGAATCCAGTGGGTCGGGGAGGGCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-328-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CCTGTTGCTGGAGGTAGGATGTGACT
siRNA sets
AGTCACATCCTACCTCCAG, TCACATCCTACCTCCAGCA, ATCCTACCTCCAGCAACAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.434703392
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page