top of page
mmu_ciActn2_1137
Basic information of circular RNA
PanCircBase ID:
mmu_ciActn2_1137
mm39_Chr. Position ID:
chr13|12290111|12291248|-
Gene name:
Actn2
Transcript:
ENSMUST00000064204.14
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
17
Exon/intron offsets:
0
Genomic length:
1137
Exon/intron sizes in nt:
1137
Flanking exon/introns:
chr13:12290110-12291248
Splice length:
1137
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATGGAGGGCGGGCACACGGGCAGGCTTGACTCACCTCGACACCTCCTCTGCTTGTTTCCTTACGCACATTCCCCTCTCCGTTTCCAGTGAATTCTGTAGGTGTGAATGCAGGGGACAGTTAAGTCTATTTACTGTGTGTGGAAGAGCACAATGAACTGTTACAAGCACTAAACAATAGTTCATTGTCAAAGTTATCCTTATTGTCATGGCGAAGTCATTACACTTCTTTGGAGAGGAACTTAAATTGTCCTTATTTCTTCCTGTTGCTCTTTGGCTAGGGTTGTTGTTGTTGTTGTTGTGACTGTGGATGGTCTCATGCACCCCAGACTCTCGTGGATCTGACCATGTAACTATGAATGGCCTGATCCTCCTGCATCCATTTCTTGGTTACTATGATCACAGACACATATCATGATGCCCGTTCCTTATTAGTGATTTTAAAAATTAGTCCAAAGAGTCAAGACTGTCCCTATTTCCACCAGTCTCCTTCAGTCTGATCTCCCTGGGAGACTTTGGGTATAGCCCAGTGTCCATCCAGCTATTTGGTAAGTGTGAAGATGTCTTTAGTCACAAATAGACCACACATTGAATATTTAATCTACAAAGTATGGGCCAGAAATGTAGTTTAGGTATAGTGTTTGTTTTTTTTTTTTTTTTTTTTTGGTCTAGCATGTGCAAGGCCCTAGGTTTAACCCCTAGTTCCAAGTATATGTAACATAAATAAGAAATACGAATTATGCGAAGTGCCACTTTGTAGATTGTCATTTGTAGAATTCTGGTCTCATTCCTTAATATTTCCCACACTACAGAATCTTGCAAAAGTTGAAACAGTGAAAAAACATTTTTAAGTCCAAGAGAGTCAAGCTGTTGAGACGGCTCAGCAGGCAGAGGCACTTGCTGTGAGGTCTGACAATCTGAGTTGAGTTCTAGGAACCTGTGTCAAAGAGAGACTCCAAAATTTCCCTGTGATCGCTGCACAGGGACTCCCCGCACTGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGACAAATAGAATGAGCGTAGCAAACCTATACCAAGCCCTGCGTATTTCCTGCTCATGATGCACTAAAACCTCCTTGACCTAGTTGACGGCTGGTTCTTCTCCTTGGTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AACCTATACCAAGCCCTGCG
59.82
AACAAGCAGAGGAGGTGTCG
59.97
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AACCTATACCAAGCCCTGCG
59.82
CAAGCAGAGGAGGTGTCGAG
60.11
142
PCR template sequence:
GAATGAGCGTAGCAAACCTATACCAAGCCCTGCGTATTTCCTGCTCATGATGCACTAAAACCTCCTTGACCTAGTTGACGGCTGGTTCTTCTCCTTGGTAGTATGGAGGGCGGGCACACGGGCAGGCTTGACTCACCTCGACACCTCCTCTGCTTGTTTCCTTACGCACATTCCCCTCTCCGTTTCCAGTGAATTCTGTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
18
Interacting miRNAs (#binding sites)
mmu-miR-503-5p(2), mmu-miR-210-3p(1), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-1a-3p(1), mmu-miR-206-3p(1), mmu-miR-103-3p(1), mmu-miR-15b-5p(1), mmu-miR-335-5p(1), mmu-miR-298-5p(1), mmu-miR-495-3p(1), mmu-miR-107-3p(1), mmu-miR-383-5p(1), mmu-miR-384-3p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTTCTCCTTGGTAGTATGGAGGGCGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.81224442
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page