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mmu_ciAcly_484
Basic information of circular RNA
PanCircBase ID:
mmu_ciAcly_484
mm39_Chr. Position ID:
chr11|100410632|100411116|-
Gene name:
Acly
Transcript:
ENSMUST00000107389.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
4
Exon/intron offsets:
0
Genomic length:
484
Exon/intron sizes in nt:
484
Flanking exon/introns:
chr11:100410631-100411116
Splice length:
484
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATGTGAGGCAGTGCCAAACTGGATCTTCTTTTTCCTGCAGCTTTGTGATCGTCCTCCAAAAATGTTGAAAGGAGAGGTTAAGGTGCAAAGGGGAGAAGCCAAGGGTACCAGGGTCTCCAAAGCTCCGGCAAAGGCCTGGAGGAAATTATGGGCAAGGAGTCCAGAGATGAAGGGAAGGCTTAGTTTGCAGCAAAACAGCTAGAGCAGGTAACAGAGGGACCTCCTATTGTTGGGATGAGAACTTGAAGGTGGAACCCATTCCAGGGTGGGACCACACTGAGCCAGCTAAGGAGGTTGAGGCCTGTCTTTGCTTGTCGCCTAGCAGAAGGTAGCACACAGATCTCCTTGGGGTGAATGCTTTGTGTTAGGGTTTAGAAATGAGACTATAGGGCTTGGGTGGTCCCACTCCTGGATGAGGCCTTCTGACCCGCCCCCCTGCCAGTTGGGCACCCTTACCAGCTTCACGCTGTCTTTACTTGCAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGTCCCACTCCTGGATGAG
60.62
AGGACGATCACAAAGCTGCA
59.96
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTATAGGGCTTGGGTGGTCC
59.23
ACGATCACAAAGCTGCAGGA
59.96
153
PCR template sequence:
ACTATAGGGCTTGGGTGGTCCCACTCCTGGATGAGGCCTTCTGACCCGCCCCCCTGCCAGTTGGGCACCCTTACCAGCTTCACGCTGTCTTTACTTGCAAGTATGTGAGGCAGTGCCAAACTGGATCTTCTTTTTCCTGCAGCTTTGTGATCGTCCTCCAAAAATGTTGAAAGGAGAGGTTAAGGTGCAAAGGGGAGAAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-205-5p(1), mmu-miR-320-3p(1), mmu-miR-149-5p(1), mmu-miR-96-5p(1), mmu-miR-324-3p(1), mmu-miR-350-3p(1), mmu-miR-540-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCTTTACTTGCAAGTATGTGAGGCAG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIACLY_484_ORF_3
0.9331
-0.072887381
0.036769164
78
ORF sequence:
ATGAGGCCTTCTGACCCGCCCCCCTGCCAGTTGGGCACCCTTACCAGCTTCACGCTGTCTTTACTTGCAAGTATGTGA
Peptide sequence:
MRPSDPPPCQLGTLTSFTLSLLASM
IRESfinder result
IRESfinder score
0.570549095
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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