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mmu_ciAcad9_59

Basic information of circular RNA
PanCircBase ID:

mmu_ciAcad9_59

mm39_Chr. Position ID:

chr3|36128605|36128664|+

Gene name:

Acad9

Transcript:

ENSMUST00000011492.15

CircRNA type:

Circular intronic (ci)RNA

Exon/Intron count:

1

Exon/intron indexes:

4

Exon/intron offsets:

0

Genomic length:

59

Exon/intron sizes in nt:

59

Flanking exon/introns:

chr3:36128605-36129391

Splice length:

59

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

GTCAGTGGTCAGAAGTAGGAGACAGGGGACTGTTTCTGTGACATGAGGGGACTTTATAG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

NA

NA

NA

NA

NA

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

NA

NA

NA

NA

NA

PCR template sequence:

TGTTTCTGTGACATGAGGGGACTTTATAGGTCAGTGGTCAGAAGTAGGAGACAGGGGA

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

1

Interacting miRNAs (#binding sites)

mmu-miR-212-3p(1)

siRNAs for circular RNA silencing
Junction sequence

GGGGACTTTATAGGTCAGTGGTCAGA

siRNA sets

ACTGACCTATAAAGTCCCC

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

NA

NA

NA

NA

NA

ORF sequence:

NA

Peptide sequence:

NA

IRESfinder result

IRESfinder score

0.82974872

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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Institute of Life sciences, Bhubaneswar, India

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