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mmu_ciAbcc8_559
Basic information of circular RNA
PanCircBase ID:
mmu_ciAbcc8_559
mm39_Chr. Position ID:
chr7|45785026|45785585|-
Gene name:
Abcc8
Transcript:
ENSMUST00000210655.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
559
Exon/intron sizes in nt:
559
Flanking exon/introns:
chr7:45785010-45785585
Splice length:
559
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGGGCTCACCCCACCCTTCCAGATGTGCCCTCGTGTCCCAAAAGAGAGGAAAAGCCAAATCAATGTTTGCTGAGCACCTGCTCTCTGTTGCCTAGCTGGGTATTCTGAGGTCTGAATTCTAAACAGAAACCGGCTACAGCCAAGATGAGGTCACCTTGATGTCAAACCTTCTGTTGCCAGTGACATCTTAACAGGTGTCAGTCAGACTTGAGTGTTCTGGGAGGATTATGGAAATGGAGAGTCTGAACACAGCCGTGTTCTGGTCAGGCCGGTGGCAGAGGGTCATAGGTGGGAGCTATGCTGGAACTGTGGGAGGACTATAAGGAGTACCAGGAGGAGCACTGGGGTGAAGCAGAGGATGTCGGGAGTGGAGGACGGACCTGGGAAGCCAGAGAACACTGTCAATTCCAGAAGGAAAAACTCTGGAATATGGAGCTTCCCAGGGTTTCCAGGTGGGGAGGAGGGTGGGGAGGAGAGTCAGAGCTAAGTGTACATGTCCATCTAGTCTTCTGGGTGAGAGTTGTTCAGACTCCATCCAGCTTCCATTCCATCTACTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGGGAGGAGAGTCAGAGCTA
59.45
GCAGGTGCTCAGCAAACATT
59.68
174
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGTGGGGAGGAGAGTCAGAG
60.69
GCAGGTGCTCAGCAAACATT
59.68
177
PCR template sequence:
GAGGAGGGTGGGGAGGAGAGTCAGAGCTAAGTGTACATGTCCATCTAGTCTTCTGGGTGAGAGTTGTTCAGACTCCATCCAGCTTCCATTCCATCTACTGGTAGGGCTCACCCCACCCTTCCAGATGTGCCCTCGTGTCCCAAAAGAGAGGAAAAGCCAAATCAATGTTTGCTGAGCACCTGCTCTCTGTTGCCTAGCTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-207(2), mmu-miR-136-5p(1), mmu-miR-383-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATTCCATCTACTGGTAGGGCTCACCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIABCC8_559_ORF_1
0.696
0.052335509
0.135185339
264
ORF sequence:
ATGCTGGAACTGTGGGAGGACTATAAGGAGTACCAGGAGGAGCACTGGGGTGAAGCAGAGGATGTCGGGAGTGGAGGACGGACCTGGGAAGCCAGAGAACACTGTCAATTCCAGAAGGAAAAACTCTGGAATATGGAGCTTCCCAGGGTTTCCAGGTGGGGAGGAGGGTGGGGAGGAGAGTCAGAGCTAAGTGTACATGTCCATCTAGTCTTCTGGGTGAGAGTTGTTCAGACTCCATCCAGCTTCCATTCCATCTACTGGTAG
Peptide sequence:
MLELWEDYKEYQEEHWGEAEDVGSGGRTWEAREHCQFQKEKLWNMELPRVSRWGGGWGGESELSVHVHLVFWVRVVQTPSSFHSIYW
IRESfinder result
IRESfinder score
0.450235009
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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