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mmu_ciAbcc8_1279
Basic information of circular RNA
PanCircBase ID:
mmu_ciAbcc8_1279
mm39_Chr. Position ID:
chr7|45768519|45769798|-
Gene name:
Abcc8
Transcript:
ENSMUST00000210655.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
9
Exon/intron offsets:
0
Genomic length:
1279
Exon/intron sizes in nt:
1279
Flanking exon/introns:
chr7:45768505-45769798
Splice length:
1279
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGGAGCCACAGAGGACAGACTATGGAGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCGCGCGCACACGCATGTGCTCTTCAAAAGAATCAGCCATGTGACCCAGAAGCAATGGCTGATAGCCACAGCACAAGATGCCAGTCCTAAGTGGTTTTGTGCAGCCCAATAAACACTTGTAGTCCAGTCTTGGTGTGGCTCAGGCCTGAGACACTCCCAGCCTGCCTTGGTTCCTTTCTGGTGTATATTAGAGGAGCACCGGACAGTCTGAGGAAAAGTAGACACTCAGTTCTTACCGTCTAGAAGGCCTTGTCCTGCCTGCTTCCCCTGGCTATGTATGATCTGTTTAGATGGGAGAGCCAAGCCTGGGTCTTTGGCCTTTGGGGATGAGTGGGTTGGAGCCTCTGTTGTGTGGAGGATGCTGGAAAAGAGGCAGTAGTCCTGTAGACCACAGCACTCCCACAGAACATGGTGCTGTGAACCCCATGCTGACTAACAGAAGAACTAACCCTGTTCTTCAATAGATAGGGACATACTTCTCTCCGTCTCATTGGGGATCGATTAATGCTAAGACAAAGACAATGAGCCTTTGGAAATCTACACCTGCCTACTCCTAATCCAAAATGTCCCTGGACAGCCGCCACAATCTGAGACCCTCTCAGATCTTTAAGGCTGAGCCAAATAGGCCTGTTAATTAATTTCTCTCAAAATAAATCTTCCATGGGAAATGTGAACCTCCTCCACTATGATAAACACCAGAAGAAACAAAATTCTGAACGCTATTAAAACAGGTAAAGTGACTTCAGAAAGCCAGGTGGTTGTAGTTCAGAACGACCCTGAGTCCAGTAAGGCAGACATGGAGGTGCCTGGTTCCTTGCGGTATCTGTGCACAGGATCCCAGGATGCACGGCAGCTATGTATGGTGGTGTCGTTGGGTGCAGCCATACCTGCTTGGACTAACAAGCGTGTTACCACCAACTGATAGACTCTACCATCAGGTACAGCTCAGGATAACATACAATTGGCCTACTTAGCATATGGAAACTGATGTTGATGGGGTCCTGTGGGTAACCTGCTTTGCTGGCCAAGGGATACTCATTAGTTCTGCAAAGACACCCACTGAGGATGGTTTTTGACAAGAGTGGGTTGCCAGACCACACAGGCAGTGGATTAAGGTAGCTATTGATAGAGCGTGAAAGATGCTACACCCCTGTCTCAGACTCCTCTAAGGGAGCCAAACCTGTCTCCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTACACCCCTGTCTCAGA
59.89
CGCAAACACACACACACACA
60.11
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCTACACCCCTGTCTCAGAC
59.47
CGCAAACACACACACACACA
60.11
141
PCR template sequence:
CCAGACCACACAGGCAGTGGATTAAGGTAGCTATTGATAGAGCGTGAAAGATGCTACACCCCTGTCTCAGACTCCTCTAAGGGAGCCAAACCTGTCTCCTGTGAGGAGCCACAGAGGACAGACTATGGAGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCGCGCGCAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
12
Interacting miRNAs (#binding sites)
mmu-miR-466d-3p(3), mmu-miR-466b-3p(3), mmu-miR-544-5p(2), mmu-miR-23b-3p(1), mmu-miR-23a-3p(1), mmu-miR-185-5p(1), mmu-miR-297a-5p(1), mmu-miR-705(1), mmu-miR-680(1), mmu-miR-673-5p(1), mmu-miR-539-5p(1), mmu-miR-697(1)
siRNAs for circular RNA silencing
Junction sequence
AAACCTGTCTCCTGTGAGGAGCCACA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.621439793
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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