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mmu_ciAars_301
Basic information of circular RNA
PanCircBase ID:
mmu_ciAars_301
mm39_Chr. Position ID:
chr8|111769973|111770274|+
Gene name:
Aars
Transcript:
ENSMUST00000154546.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
301
Exon/intron sizes in nt:
301
Flanking exon/introns:
chr8:111769973-111770274
Splice length:
301
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGCGTAGAAAAGTCTCTGCTTTTCTCTTCTGTGCTGAAGCCCTAGTCTAAGAGGGATATGGTAGGTGGTAATGTTCTGTGAGTGGACATTTTAAGAGAGAGACCGTGGAGGCCAGGGATGGCGGTGCGCACTTTTGATCCCAACACTTGAGAGGCAGAGGCAGATGAGTTTGAGGCCAGCCTGATCTGCACTGTGTAAGTTACAGGCCAGCCAGGACTGCATATAGAATGAAGCCCCATCTTAAAAAGGAAGGAGGGTGTTTCACGGAATAGCCTGCTCACACTGAACCTTTTCTGTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCAGCCAGGACTGCATATA
59.6
CCTCTTAGACTAGGGCTTCAGC
59.64
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCCAGCCAGGACTGCATATA
59.6
TCTTAGACTAGGGCTTCAGCAC
59.24
148
PCR template sequence:
TACAGGCCAGCCAGGACTGCATATAGAATGAAGCCCCATCTTAAAAAGGAAGGAGGGTGTTTCACGGAATAGCCTGCTCACACTGAACCTTTTCTGTCAGGTGCGTAGAAAAGTCTCTGCTTTTCTCTTCTGTGCTGAAGCCCTAGTCTAAGAGGGATATGGTAGGTGGTAATGTTCTGTGAGTGGACATTTTAAGAGAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-20b-5p(1), mmu-miR-17-5p(1), mmu-miR-152-3p(1), mmu-miR-185-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CCTTTTCTGTCAGGTGCGTAGAAAAG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.597197995
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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