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mmu_ci5330439M10Rik_85
Basic information of circular RNA
PanCircBase ID:
mmu_ci5330439M10Rik_85
mm39_Chr. Position ID:
chr10|117948560|117948645|+
Gene name:
5330439M10Rik
Transcript:
ENSMUST00000218667.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
85
Exon/intron sizes in nt:
85
Flanking exon/introns:
chr10:117948560-117959790
Splice length:
85
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAATTCTTCCACACTATCCTCTTCATCCTCGTAGCTGCAGTTCCAGATGGCATGGCCCCTGCGCCTTTGCTCTCTCTGACCTGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTGCTCTCTCTGACCTGGGT
60.18
ACTGCAGCTACGAGGATGAAG
59.86
60
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTGCTCTCTCTGACCTGGGT
60.18
ACTGCAGCTACGAGGATGAA
58.81
60
PCR template sequence:
CCAGATGGCATGGCCCCTGCGCCTTTGCTCTCTCTGACCTGGGTAATTCTTCCACACTATCCTCTTCATCCTCGTAGCTGCAGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
CTCTCTGACCTGGGTAATTCTTCCAC
siRNA sets
GAAGAATTACCCAGGTCAG, AGAATTACCCAGGTCAGAG, GAATTACCCAGGTCAGAGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CI5330439M10RIK_85_ORF_1
0.6574
-0.142068932
0.022728841
117
ORF sequence:
ATGGCCCCTGCGCCTTTGCTCTCTCTGACCTGGGTAATTCTTCCACACTATCCTCTTCATCCTCGTAGCTGCAGTTCCAGATGGCATGGCCCCTGCGCCTTTGCTCTCTCTGACCTG
Peptide sequence:
MAPAPLLSLTWVILPHYPLHPRSCSSRWHGPCAFALSDL
IRESfinder result
IRESfinder score
0.710368801
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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